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Genome Browser Tracks

Genome

Multiple Assemblies: hg38, hg19 and mm10

Genes

53000 genes and 111000 transcripts from RefSeq.
Display HGVS nomenclatures.

Public variants

More than 700 000 000 variants from dbSNP, gnomAD, Clinvar, GoNL, HGVD, 1000Genomes and ESP.

Splicing

Splicing prediction on transcript with MaxEntScan, SSF and NNSplice

Splicing regulation

Splicing regulation on transcript

Nucleotide conservation

Display Phylop data from the UCSC

Orthologs

Orthologous alignments on several species for a transcript

Private variants

The variants can be saved in a private area and available on this track

Private annotations

Annotations can be saved in a private area and available on this track

Repeat masker

Display DNA sequences for interspersed repeats and low complexity DNA sequences

CNV

Display Structural variants from DGV and gnomAD

Secondary structures

Secondary structures from uniprot and predicted by spider3 on all transcripts

Read the documentation

Variant annotation

Archigene Browser integrates variant creation and annotation in an simple and intuitive way.

Annotation on all transcripts of a gene
HGVS nomenclatures
Impact on transcipt and protein
Impact on splicing with multiple predictors
Correspondence with public variants
Private classification, comment and phenotype

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